PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P06480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 430aa    MW: 47337.1 Da    PI: 9.541
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P06480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13136180147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSMUA_Achr1P06480_001 136 RESWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 180
                            789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-16130186IPR009057Homeodomain-like
PROSITE profilePS5129415.346131185IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-6134186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17134183IPR006447Myb domain, plants
SMARTSM007173.9E-11135183IPR001005SANT/Myb domain
PfamPF002491.8E-11136180IPR001005SANT/Myb domain
CDDcd001672.08E-8138181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MIAAPLHCQQ TSDSIRIALP LVHPHRQPVH RHRPSPCTSP ISSHRHSRSR RPPYLLSRRL  60
PRSLFLFMVF VHAKAIRGSR EASPKSAAFL PPDLPSPSMA LPGAAGPLAA SSAPAAAAAE  120
DPSKKIRKPY TITKSRESWT EQEHDKFLEA LHLFDRDWKK IEAFVGSKTV IQIRSHAQKY  180
FLKIQKNGAS EHVPPPRPKR KAAHPYPQKA PKYALQISQG TTPHQASCLL EPHSAFGIDT  240
SSMSRNSNTN EAVPSGLNSS LHPVSASHLT SDDMGHAGNL VVKNCCSSST ISPVTWPTCE  300
MADHENHVTA LRVMPDFAQV YSFLGSVFDP STTGHLQKLK EMDPIDVETV LLLMGNLSIN  360
LTSPDFEAHR KLLASFSGGT EDLDSGIANN LTCETVAPLC KFMSLKLLAI NHIEFHYNQP  420
TSHLKFQGER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394929.10.0PREDICTED: protein REVEILLE 3-like isoform X1
SwissprotQ6R0H02e-96RVE3_ARATH; Protein REVEILLE 3
TrEMBLM0RXK60.0M0RXK6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P06480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.17e-83MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]