PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P01570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 338aa    MW: 35737.7 Da    PI: 7.4688
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P01570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.4e-18246280135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  GSMUA_Achr1P01570_001 246 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 280
                            *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16240290IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-13244278IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-14244304No hitNo description
PROSITE profilePS5011411.227244276IPR000679Zinc finger, GATA-type
CDDcd002025.27E-14245292No hitNo description
PROSITE patternPS003440246271IPR000679Zinc finger, GATA-type
PfamPF003201.0E-15246280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVPEWEMATG VDFGMGMEFG SGARYSTTAP VVAPLTPTTS ATATTPAYLY GALPPTADAS  60
LRVDDLLDFS DHDLYASVGV DAQFYATTTT VPGSGPPSGQ TFSGRQSQHT TFDLYVPQCE  120
DAAELEWLSK FVEESFSDVP SYQSGAAVIA PSCEAQLRAE QSANGRGARG KRSRATIGAV  180
SAAAWSSLVT PPHPPAQNSP SSSSSSSSSE FSPSRPKAGG ADNGNRGSRG KKGGGGVGLE  240
GGVRRCTHCA SEKTPQWRTG PLGPKTLCNA CGVRFKSGRL VPEYRPAASP TFVLTQHSNS  300
HRKVMELRRQ KELLLLRHQE NDPSSARPDL LFSDYGVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693008e-81AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBankAK2422928e-81AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence.
GenBankAP0149668e-81AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126188e-81CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8378198e-81CT837819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN064N24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400219.10.0PREDICTED: GATA transcription factor 4 isoform X2
SwissprotO497419e-57GATA2_ARATH; GATA transcription factor 2
TrEMBLM0RW650.0M0RW65_MUSAM; GATA transcription factor
STRINGGSMUA_Achr1P01570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.19e-46GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]