PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P24820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 279aa    MW: 30574.7 Da    PI: 4.5111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P24820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-183181155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a++ a+++++g
  GSMUA_Achr11P24820_001 31 CRYRGVRQRT-WGKWVAEIREP---N-RgGRLWLGTFPTATEAALAYDDAARAMYG 81
                            78*****999.**********8...2.359**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-123181IPR001471AP2/ERF domain
CDDcd000184.33E-303189No hitNo description
SMARTSM003806.3E-343295IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-203289IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-293289IPR001471AP2/ERF domain
PROSITE profilePS5103221.3773289IPR001471AP2/ERF domain
PRINTSPR003671.2E-93344IPR001471AP2/ERF domain
PRINTSPR003671.2E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDGEKPIRKP PARGSKKGCM RGKGGPENPS CRYRGVRQRT WGKWVAEIRE PNRGGRLWLG  60
TFPTATEAAL AYDDAARAMY GSLARVNLPG AVMSKSCEST TTSHHSDAIN ASVSSTGHIK  120
VPSIEPKDKV HFPKAELDDE ELKGEAGCDK EPSSTADASN MGVCQYGDQT DAPEDEFSVE  180
EMLRLMGDDT EVNVHDQFGT VHADTNWQCF SPSGMSSGFQ NPDATTLGSL WRTEENPFDC  240
KDSLLWPWVD DQDKGPEEAI ETSEFGVSYG DFLSSPNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-173389360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384927.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like isoform X1
RefseqXP_009384928.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like isoform X2
RefseqXP_009384929.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like isoform X2
TrEMBLM0RV620.0M0RV62_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P24820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.18e-35ERF family protein