PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P17370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 226aa MW: 22966.1 Da PI: 9.5258 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 74.9 | 2.3e-23 | 1 | 84 | 24 | 113 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaasalnl 110 ++a caar+F+L++eLG+++d++ti+WLl+ a+pai ++tgt++ +a ++ + +++ +++ +a+++a+ +++++aa+ + GSMUA_Achr11P17370_001 1 MPAACAARIFQLTRELGHKSDGETIQWLLERAEPAILAATGTGTVPAIAT------NVGGTLKIPTEAPTSAPVTSTSAPAAADDPV 81 9*****************************************88888444......2222223332222222222222222222222 PP TCP 111 ake 113 a + GSMUA_Achr11P17370_001 82 APD 84 221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-17 | 1 | 59 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 19.793 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPAACAARIF QLTRELGHKS DGETIQWLLE RAEPAILAAT GTGTVPAIAT NVGGTLKIPT 60 EAPTSAPVTS TSAPAAADDP VAPDDEEAGK KRRKKLQPSR TGRVQGVVPM WALGGSAAGA 120 SVIPPGALWV LPQPSTAVAG TSSQSHVWTF PQTPQIIQLA SARPISAGGL FSGVNVATGP 180 EGEPSAASPP AAGRKHEPRL MSAPVASRRG QLSRSSASMV PSDCCT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 93 | KKRRK |
2 | 89 | 94 | KKRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384074.1 | 1e-126 | PREDICTED: transcription factor PCF2-like | ||||
Swissprot | A2YXQ1 | 8e-36 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 8e-36 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | M0RT17 | 1e-157 | M0RT17_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P17370_001 | 1e-158 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 2e-29 | TCP family protein |
Publications ? help Back to Top | |||
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