PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P17140_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 222aa MW: 23937.8 Da PI: 4.9206 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.6 | 2e-19 | 138 | 172 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C++ +Tp+WR gp+g+ktLCnaCG+++++ +l GSMUA_Achr11P17140_001 138 CRHCQAEETPQWRAGPEGPKTLCNACGVRFKSGRL 172 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.8E-17 | 132 | 182 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.622 | 132 | 168 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.8E-14 | 135 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.9E-15 | 136 | 170 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.94E-14 | 137 | 194 | No hit | No description |
Pfam | PF00320 | 3.3E-17 | 138 | 172 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 138 | 163 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MALSEKAMTE PLEEETAAEA CFADELLFMD FTSDPYHPPL EAASSAAATA AAGELHLHAL 60 LFQELFDPSG DGLPGLPTEG GDGGDEEEEE LEWLANKDAF PALETSFEIP APSRSGGGGG 120 SGIKAGAAMV CTLERRRCRH CQAEETPQWR AGPEGPKTLC NACGVRFKSG RLVPEYRPAS 180 SPTFSAAIHS NSHRRIVEMR RQKAVCERRS TTAPRRPSLL LR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384051.1 | 1e-114 | PREDICTED: GATA transcription factor 1-like | ||||
TrEMBL | M0RSZ4 | 1e-159 | M0RSZ4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P17140_001 | 1e-160 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-37 | GATA transcription factor 1 |