PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P15540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 249aa MW: 26032.7 Da PI: 6.3085 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.6 | 1.1e-38 | 57 | 136 | 2 | 81 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ + s GSMUA_Achr11P15540_001 57 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALasA--AAAGS 136 789******************************************************************777321..22222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-32 | 62 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 63 | 117 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDLRDSSPKF HQALGLPQPH KSEPTTASAA AESRDLAPST GSQAVAAEKD EPRKQLAPKR 60 SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA EPSIIAATGT 120 GTIPASALAS AAAAGSLSRP GATVSAGLHP KLDELTASSS SLATAGGVDG FASMLAAHGQ 180 QLPGLELGLS QDGHVGVLNP QTLNQFYPQI GYGRAAAGSG GSGQLHDQEQ QQQQQERVFS 240 AEDDSDESE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383866.1 | 1e-133 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 5e-54 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M0RSI4 | 1e-178 | M0RSI4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P15540_001 | 1e-179 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-43 | TCP family protein |