PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P11830_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 252aa MW: 28299.4 Da PI: 7.4645 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62 | 7.2e-20 | 176 | 209 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt +Tp+WR+gp+g+++LCnaCG++y++ + GSMUA_Achr11P11830_001 176 CRHCGTRETPQWRSGPNGSSELCNACGIRYKSGR 209 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.2E-14 | 170 | 220 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.38E-13 | 172 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.0E-15 | 174 | 207 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.59E-17 | 175 | 218 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.9E-18 | 176 | 209 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.701 | 176 | 206 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVPTLAALFV MVYRPRLFNL DLDESLEPHM DDPADEPLYV PDDPLDSIRF LFDPLDESIV 60 ASWKPEVTEF SVAEAAEVLR PDCHTAVPGT LRRPRSQHQP RARRLDPMTS APGGVDGAQR 120 RSRSLDPWGT APADVGDARG RGRRRRRARS STRESLDAAD DPITRDENVG DGERICRHCG 180 TRETPQWRSG PNGSSELCNA CGIRYKSGRL FPEYRPSTTA TSIDSSNYSN RHSTIMTIRQ 240 RRENEGRGRE RG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 148 | RGRGRRRRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383570.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | M0RRG3 | 0.0 | M0RRG3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P11830_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15709 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-22 | GATA transcription factor 4 |