PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P10940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 287aa MW: 29895.2 Da PI: 9.808 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 7e-39 | 64 | 143 | 2 | 81 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s s GSMUA_Achr11P10940_001 64 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAIAAAASASI 143 789******************************************************************88744444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.9E-32 | 69 | 245 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.07 | 70 | 124 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDPKGSSKLP QEVPNFHLQS DKSEPTTPPA TAAAESRDLS ASAGLERGRQ VVVAGKDEQR 60 RQLAPKRSSN KDRHTKVDGR GRRIRMPALC AARIFQLTRE LGHKSDGETI QWLLQQAEPS 120 IIAATGTGTI PASAIAAAAS ASIRSHPGLW PPPVGGLNSG FLHAGAAAPS SSNLATGGGG 180 DWSMGGFMPR IGLHGLEFPG GNLGAVSFAA MLGGHGQQLP GLELGLSPEG HIGAMNPQGL 240 SQFYQQMGQG RGGVGGGGSG QLHHHHHQQQ QHQQQARSEN DSQGSEQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615903 | 1e-113 | JX615903.1 Gossypium hirsutum clone NBRI_GE60175 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383326.1 | 1e-144 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 4e-60 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M0RR74 | 0.0 | M0RR74_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P10940_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-34 | TCP family protein |