PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P10010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 647aa    MW: 69727.9 Da    PI: 5.1468
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P10010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31282339260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y++ Hnh+k
  GSMUA_Achr11P10010_001 282 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIVYKSAHNHPK 339
                             8****************************************.***************85 PP
2WRKY1031.6e-32496554159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k++er+++d k v++tYeg+Hnh+
  GSMUA_Achr11P10010_001 496 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCMVRKHIERASHDLKSVITTYEGKHNHD 554
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-28278340IPR003657WRKY domain
SuperFamilySSF1182905.75E-25279340IPR003657WRKY domain
SMARTSM007744.7E-35281339IPR003657WRKY domain
PROSITE profilePS5081122.837282340IPR003657WRKY domain
PfamPF031063.8E-24282338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36481556IPR003657WRKY domain
SuperFamilySSF1182901.44E-28488556IPR003657WRKY domain
PROSITE profilePS5081137.929491556IPR003657WRKY domain
SMARTSM007746.5E-38496555IPR003657WRKY domain
PfamPF031061.0E-24497554IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAGTEDNSST IEYWPPPNSG SRTLSNSSND EFGSKSLSIF LAENGNVGPS WKSETQSMGP  60
STKAEEGEAD VNDSNEFSLQ SKLFGAPISS SSGGLAERMA ARKGFNVPKL DTAGIPPASM  120
ASHSDIHSPY LTIPPGLSPT MLLESPVFLA DPMAQLSPTT GKFQFGENVA SNPILVSDSS  180
DPTKSEDDLF EDIPEAFAFK PPPESHLNLS SSETKVMLLA LLTLQQQELP SMEVSTGPEK  240
PTQSRSIEAG MASHHSPAVD DQEDGDADLR GELSTTVGTP AEDGYNWRKY GQKQVKGSEY  300
PRSYYKCTHP NCQVKKKVER SHEGHITEIV YKSAHNHPKP HVNRRSGVPS SHPFNDPQIN  360
ESEQPGSQTS FDGKPVKGSS QSGNGGQEWL GDGLEATSSA PVAAECCDTS NALQRIQDGT  420
RLSPDVVGVS STLSNDEEED DRATHGSVSL GCDGEGDETE SKRRKLDACA IEMSAASRAV  480
REPRVVVQTT SEIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCMVR KHIERASHDL  540
KSVITTYEGK HNHDVPAARS NSHINSAPSN TAPISAPQPH ILQQRPEPTQ DCFVRFDGHT  600
ALNAFNFPGR EQLGSTTSFP FALGQPGLTN LAMAGLGPMA AMKMSDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37282557878Probable WRKY transcription factor 4
2lex_A2e-37282557878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383204.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_018675721.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_018675722.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG771e-142WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM0RQY10.0M0RQY1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P10010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-141WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]