PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P03520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 639aa    MW: 69350.3 Da    PI: 5.7925
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P03520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.45.4e-3080164187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW++qe+laL+++r+em+ ++r++  k+plWeevs+k++e g+ers+k+Ckek+en++k+yk+ k+g+ +r  ++ +t++++++lea
  GSMUA_Achr11P03520_001  80 RWPRQETLALLKIRSEMDAAFRDATIKGPLWEEVSRKLAELGYERSAKKCKEKFENVHKYYKRKKDGRAGR--QDGKTYRFYSELEA 164
                             8********************************************************************98..56667******985 PP
2trihelix109.52.1e-34378463187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k ev+aLi++r+++e++++++  k+plWee+s  m++ g++rs+k+Ckekwen+nk++kk+keg++kr +e+s+tcpyf+ql+a
  GSMUA_Achr11P03520_001 378 RWPKAEVHALIDLRSSLESSYQDSGPKGPLWEEISTGMQRLGYNRSAKRCKEKWENINKYFKKVKEGNRKR-PEDSKTCPYFHQLDA 463
                             8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.007777139IPR001005SANT/Myb domain
CDDcd122033.47E-2879144No hitNo description
PROSITE profilePS500906.85379137IPR017877Myb-like domain
PfamPF138371.0E-2079165No hitNo description
SMARTSM007170.013375437IPR001005SANT/Myb domain
CDDcd122032.37E-29377442No hitNo description
PROSITE profilePS500907.155377435IPR017877Myb-like domain
PfamPF138374.3E-24377464No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MQQQQEGGSQ FGGPSSETAG HRVGAFLQPP PLLAEAASPI SSRRPPPEDA AADFDEMGPA  60
VAGGGFPDED AERGGAPGNR WPRQETLALL KIRSEMDAAF RDATIKGPLW EEVSRKLAEL  120
GYERSAKKCK EKFENVHKYY KRKKDGRAGR QDGKTYRFYS ELEALHSTGR GGATTPAAIA  180
ALSPISGGAP PPVTMPTSVV PEHGAQGVSS SAAAAAAAGL GFSSNSSSSS SSESDDADTE  240
EAGGVGKGRK RKHRGSARYR RQMMAFFEGL MKQVMERQEA MQQRFLDAID KREQDRMKRE  300
EAWRLQEMSR LSREQELLVQ ERSMAASRDS AVVSYLQKIS GQSIPLAAAA SIAPRPPQPS  360
EAQEGQGSGS FEPTSSSRWP KAEVHALIDL RSSLESSYQD SGPKGPLWEE ISTGMQRLGY  420
NRSAKRCKEK WENINKYFKK VKEGNRKRPE DSKTCPYFHQ LDALYRKKLL GSSGGGTSSS  480
SVGVKPQQEP ISQEQHQQRP ATKTPGDSGN DNGNSNGGNA EAGEGRDGAQ VQTSEGGHRP  540
TFFEEAMKKP EDIVKEPMER RQRQPVMDDP DKVDEPDSNN LHEDEEDDDD NEDDEDSKMQ  600
YEIQFQRQSV SGGGGGGNAS TTASAAATTA AGSFLAVVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382323.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0RP320.0M0RP32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P03520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-72Trihelix family protein