PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P30290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 229aa MW: 23778.4 Da PI: 7.5556 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100 | 1.7e-31 | 68 | 122 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkNhA+ +GghavDGCgEfm++ g+eg+ +al+CaACgCHRnFHR+++ee GSMUA_Achr10P30290_001 68 GRYRECLKNHAVGIGGHAVDGCGEFMAA-GAEGSLDALRCAACGCHRNFHRKDPEE 122 59*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 5.0E-29 | 69 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.3E-28 | 69 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.629 | 70 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 72 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.02E-19 | 155 | 227 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-32 | 156 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-25 | 166 | 223 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDFDDHDEGE EEMDLPMGSS YDTPMENSGR GGGGGGGAKM GGGGESAGTM AVGGSGHRKA 60 YGGGGGRGRY RECLKNHAVG IGGHAVDGCG EFMAAGAEGS LDALRCAACG CHRNFHRKDP 120 EEGGAGGGGA SWGGGAMEIS GYHSQAAPLA LPSTGGGMAA SGSGARKRFR TKFTQEQKDK 180 MLAFAERLGW RIQKHDEAAV QQFCEETCIK RHVLKVWMHN NKNTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-29 | 167 | 224 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381483.1 | 1e-116 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 2e-73 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 2e-73 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | M0RMQ3 | 1e-164 | M0RMQ3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P30290_001 | 1e-165 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-58 | homeobox protein 22 |
Publications ? help Back to Top | |||
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