PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P27510_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 200aa MW: 21543.6 Da PI: 11.6699 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.9 | 6.5e-19 | 59 | 92 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++ k + GSMUA_Achr10P27510_001 59 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQSKAR 92 *****************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-18 | 53 | 104 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.32E-13 | 54 | 94 | No hit | No description |
PROSITE profile | PS50114 | 12.242 | 57 | 86 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.2E-16 | 57 | 92 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.45E-11 | 58 | 90 | No hit | No description |
Pfam | PF00320 | 2.5E-16 | 59 | 92 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 59 | 84 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSSKMRFMRK MMNSSHIVVS KQPRGSMRIT PDDQSRSHRL GYSGSNRSNN SPSGIIRVCS 60 DCNTTKTPLW RSGPRGPKSL CNACGIRQSK ARRAMAAAAP NGGLIIPATS PAKAPRQEKI 120 DIDRTLPFKK RCKIDTASSS SSSSSSSTTT TTTASSSRKH CFGNVTSSSN KSSAIQRVFP 180 QEERDAAILL MGLSCGLIRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381174.1 | 1e-142 | PREDICTED: GATA transcription factor 21-like isoform X2 | ||||
Refseq | XP_018674954.1 | 1e-142 | PREDICTED: GATA transcription factor 21-like isoform X2 | ||||
TrEMBL | M0RLX5 | 1e-142 | M0RLX5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P27510_001 | 1e-142 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 3e-25 | cytokinin-responsive gata factor 1 |