PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 226aa    MW: 25762.8 Da    PI: 7.0205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-18855148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT++Ed++lv+ v ++G ++W++Ia+  g++Rt+k+c++rw +yl
  GSMUA_Achr10P26730_001  8 KGPWTEQEDLQLVCFVGLFGDRRWDSIAKVSGLNRTGKSCRLRWVNYL 55
                            79********************************************97 PP
2Myb_DNA-binding55.41.4e-1761106148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rgr+T++E+ l+++++  +G++ W++Iar+++ gRt++++k++w++++
  GSMUA_Achr10P26730_001  61 RGRMTPQEERLILELHSHWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.161355IPR017930Myb domain
SuperFamilySSF466898.07E-306102IPR009057Homeodomain-like
SMARTSM007175.7E-16757IPR001005SANT/Myb domain
PfamPF002496.7E-17855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20962IPR009057Homeodomain-like
CDDcd001678.59E-121055No hitNo description
PROSITE profilePS5129427.06356110IPR017930Myb domain
SMARTSM007171.2E-1660108IPR001005SANT/Myb domain
PfamPF002491.4E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2463109IPR009057Homeodomain-like
CDDcd001678.68E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNKMAMRKGP WTEQEDLQLV CFVGLFGDRR WDSIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGRMTPQEER LILELHSHWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKRKASPS  120
SSSSSSWSLT DNSAAPGKPP SEDAPGGGQE LNCSGTTTAL GGIGDDDDAL NGCYSMDEIW  180
DEISELSFQE REDERVSCPP MPSPVWEHFS YSLWKMDDED LGFQAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2781104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381084.11e-168PREDICTED: transcription factor MYB59-like isoform X1
SwissprotQ4JL842e-76MYB59_ARATH; Transcription factor MYB59
TrEMBLM0RLP71e-167M0RLP7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26730_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-75myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]