PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 575aa    MW: 63594.2 Da    PI: 7.9385
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23125226199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae++       ++ + +  +l+ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v
  GSMUA_Achr10P26140_001 125 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRPLQ--ELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFINKKKLVSGDAV 209
                             99****************************987666544..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   + +++el+++++r+
  GSMUA_Achr10P26140_001 210 LFL--RANDGELRLGIRRA 226
                             ***..4489999****996 PP
2Auxin_resp97.91.5e-32250331182
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                             +a+a+s ++vF + Y Pras+  F+++++k+ k++++++s G+Rfkm++++ed++ +r++G+++g+ +ldp+rWp+SkW++L
  GSMUA_Achr10P26140_001 250 VANAVSARTVFCINYDPRASRLGFIIPYWKFTKSFSHSFSTGTRFKMQIDSEDAADKRYTGLITGIGELDPLRWPGSKWKCL 331
                             689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-41118231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-39119236IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-20123225No hitNo description
SMARTSM010194.0E-22125227IPR003340B3 DNA binding domain
PfamPF023622.5E-21125226IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112125227IPR003340B3 DNA binding domain
PfamPF065071.4E-28250331IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MAAAEGRGGE SVCLELWHAC AGPQIWLPRK TSLVVYFPQG HIEQLGGAGG DGDWLGPSDV  60
PPHVLCRVVD VKLQAAADTD EVYAQLSLVA DCKELEQHLR DDETVESRRV EEADGFSKSH  120
TTHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQLR PLQELVAKDL HGTEWRFRHI  180
YRGQPRRHLL TTGWSAFINK KKLVSGDAVL FLRANDGELR LGIRRADQLK RSIHSAAFSS  240
QKNLGKLTDV ANAVSARTVF CINYDPRASR LGFIIPYWKF TKSFSHSFST GTRFKMQIDS  300
EDAADKRYTG LITGIGELDP LRWPGSKWKC LSVRWDGEVD MAGANRVSPW DIEPTGSASV  360
SDVPPPTAPK KSKISHPPDH LDHTIPNGVG YPDLEEPARF LGVLQGQEIM GLRTLYQGID  420
VTQFKVFGEY VRLQKVFQGQ ETHPPMSTRV LSHLLGTRSS WVRSIHEFSG LGTPCTSSTQ  480
VSSPSSVLMF QQANSKGDHN VLPGGKRNCR LFGFPLTEMI TVPNGIDGCE TAGSSAKQTI  540
HGRCGADPRS MYCCDTILVN IAHLPCFNKL RFCYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-108636113361Auxin response factor 1
4ldw_A1e-108636113361Auxin response factor 1
4ldw_B1e-108636113361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381030.10.0PREDICTED: auxin response factor 2-like isoform X1
RefseqXP_018675073.10.0PREDICTED: auxin response factor 2-like isoform X1
SwissprotQ0JKI91e-169ARFB_ORYSJ; Auxin response factor 2
TrEMBLM0RLI80.0M0RLI8_MUSAM; Auxin response factor
STRINGGSMUA_Achr10P26140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-165ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]