PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P23650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 434aa    MW: 48795.5 Da    PI: 7.8063
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P23650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27195248155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             ++r+ W+ +LH++Fv+av++L G ++A+Pk+il+lm+vkgLt+e+++SHLQkYR 
  GSMUA_Achr10P23650_001 195 RQRVSWSADLHTHFVKAVNHL-GLDRAVPKKILDLMNVKGLTRENIASHLQKYRK 248
                             58*******************.********************************6 PP
2Response_reg70.57e-24201291108
                             EEEESSSH.HHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
            Response_reg   1 vlivdDep.lvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                             vl vdD++ l+++ l+ ++  + +y  v++++++  alell+e++  +D+++ D++mp+mdG++ll+ i  e  +lp+i+++ ++e 
  GSMUA_Achr10P23650_001  20 VLAVDDDRvLIMNRLTLIFInDVQY-AVTATQHALTALELLRENKdnYDIVISDVQMPDMDGFKLLEIIGLEM-DLPVIMLSVKSET 104
                             6888555516777788877768888.***************888889********************996644.8************ PP

                             HHHHHHHHTTESEEEESS--HHHHH CS
            Response_reg  84 edalealkaGakdflsKpfdpeelv 108
                             +++ + +  Ga d+l+Kp+  e+l 
  GSMUA_Achr10P23650_001 105 SYVMKGVLHGAVDYLVKPVRLEDLK 129
                             ********************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1201431IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.1E-3217155No hitNo description
SuperFamilySSF521725.27E-2817144IPR011006CheY-like superfamily
SMARTSM004483.9E-2718132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.90919136IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.8E-2120129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.15E-2521136No hitNo description
Gene3DG3DSA:1.10.10.602.0E-27192252IPR009057Homeodomain-like
PROSITE profilePS5129413.629192251IPR017930Myb domain
SuperFamilySSF466896.99E-18193252IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-24196248IPR006447Myb domain, plants
PfamPF002492.3E-7197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAECGAESSW KNEFPLGMRV LAVDDDRVLI MNRLTLIFIN DVQYAVTATQ HALTALELLR  60
ENKDNYDIVI SDVQMPDMDG FKLLEIIGLE MDLPVIMLSV KSETSYVMKG VLHGAVDYLV  120
KPVRLEDLKL IWKHVIKKSL LVKKESNDPS NTHIQKQKAD NDRYSITTRK SMDKIKEKED  180
SAHENSDGEP SKQKRQRVSW SADLHTHFVK AVNHLGLDRA VPKKILDLMN VKGLTRENIA  240
SHLQKYRKTL KRNGIGLQQQ HCGGPHPHGF GVNSPGSVIL SFNPQFHAKR NFLEEHGLNE  300
YQKDSMMISS GPSWYTNSSV APSPFQHFAS FPQAGHFKME QDGYSSNSMG TERAYPLSGF  360
KNLTYQSLRP TLDQVECSMK NFHQNSLIVG GISCPDSSSQ LHHPPNENSF ETLLENNNAG  420
LDASAKLNPV MPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20191252162ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196KQKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674614.10.0PREDICTED: two-component response regulator ARR10-like isoform X2
SwissprotA2X1N21e-82ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-82ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLM0RKU00.0M0RKU0_MUSAM; Two-component response regulator
STRINGGSMUA_Achr10P23650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.14e-80response regulator 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]