PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 712aa    MW: 78218.3 Da    PI: 7.7676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07611660147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                             r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  GSMUA_Achr10P22620_001 611 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFenaKHRTYVDLKDKWKTL 660
                             6789999********************999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.99E-8416507IPR029071Ubiquitin-related domain
PROSITE profilePS500538.502421491IPR000626Ubiquitin domain
PROSITE profilePS5129414.927606665IPR017930Myb domain
SMARTSM007175.4E-7610663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-10611661IPR009057Homeodomain-like
SuperFamilySSF466894.04E-15612693IPR009057Homeodomain-like
CDDcd116601.07E-16612662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MHVDLRFASC LPLPRPCGDE EPEFWRFDGN LRSLRGSHSH PVLEVAQFHL VISHWDMVLQ  60
RRLDCGSSGY HAPVMPHVPR SARGKRSIRK KVEGKPLCAF DLLATVAGKL LSERENSLAS  120
CDNTGTSDPA AAKDTIKREQ IDSNERSIKF EAFDLLSCNE HPKSSKATSS GPTSPIVKSE  180
ISDEDAVGGE SKFIEDSHKI GYGSKKLPQG QQQTAGNATD GNALYRLDGL VDLDAKHSVL  240
GSSDSSVEVP LHRNNIYRNT LLPKQEDGMD LAACNDDDEN SSGCTHPTVV TNKTSRMQHI  300
GDRRIRKLLA SKFWRVAPTM LQDSETSNYD VEQKHALQGK RMCYTRQRTQ RNSSKRRKLF  360
DRCSVSVCGG GIYDEDVSNL CENGGIKLET YDSQGNLCEA NGASSTTTGQ KSCYESPEYH  420
VKLSIKSFKV PELVIEIPET ATVGSLKRTV LDAVTAILGG GLCVGVLLQG KKVRDDNKTL  480
HQVGISHGDK LDNLGFTLEP NPRQSPAPLT SSEDPNFLSI GCAPEPLDRI SPVAPAVVDQ  540
GGPDATQFLQ ICPESDHDSV PSPTDAASSL EKTKANSLAL VAVPPMDTEA LAMVPLRNKP  600
KRSEATQRRV RRPFSVAEVE ALVQAVEKLG TGRWRDVKLC AFENAKHRTY VDLKDKWKTL  660
VHTARISPQQ RRGEPVPQEL LDRVLSAQAY WSQQQAKLLL KPPASAETRL LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-535957021108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307DRRIRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380634.10.0PREDICTED: telomere repeat-binding protein 2
RefseqXP_009380635.10.0PREDICTED: telomere repeat-binding protein 2
TrEMBLM0RKI70.0M0RKI7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-113TRF-like 2