PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P21940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 293aa    MW: 31611.5 Da    PI: 6.3098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P21940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19127176255
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrd +     r  r++lg++ taeeAak ++ a+ kl+g
  GSMUA_Achr10P21940_001 127 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTYNTAEEAAKVYDSAAIKLRG 176
                             69*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.39E-29126184No hitNo description
PfamPF008471.1E-11127176IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20127184IPR016177DNA-binding domain
PROSITE profilePS5103223.077127184IPR001471AP2/ERF domain
SMARTSM003803.8E-33127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-28127184IPR001471AP2/ERF domain
PRINTSPR003671.5E-9128139IPR001471AP2/ERF domain
PRINTSPR003671.5E-9150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNLMDTTFLV PIKRTEHIVV TPKPFSQQPK RRPSDVPVAA PLPRTVRIFC DDYDATDSSG  60
DESGCCHSRR RVRRYVQEVR FEARSARGGP HAVGEAGKSK AAKGGGAGKK RKAGPVVATS  120
GDGSVQRFRG VRRRPWGKYA AEIRDPWRRV RVWLGTYNTA EEAAKVYDSA AIKLRGPDAT  180
TNFARPPADA ATKPKQPGTV GDEKDVAAGS SVEPGGFLPL EKDEVLFDDL LGFGVFDDDD  240
SAPIGFLAEE LSDAVLNGSG LDVDLGPTST WQGVDDFFDG IGDLFPIEPL PAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-171271831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380534.11e-179PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_018674595.11e-179PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_018674596.11e-179PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_018674597.11e-179PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0RKB90.0M0RKB9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P21940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-30cytokinin response factor 4