PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P21350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 321aa    MW: 35314.8 Da    PI: 7.1875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P21350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07124147326
                             S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              ++C++f++ G Ck+Gd C  aHg
  GSMUA_Achr10P21350_001 124 GAPCPDFRKAGGCKRGDACDLAHG 147
                             589****************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.7E-6117149IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4121148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859121149IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5125147IPR000571Zinc finger, CCCH-type
SMARTSM0035611157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMMIGRDISH LNPTVHVPPW PPFDDPTAVT TSSSHYPVCG VATGDGVLDE DTVVTMQLYL  60
GLQEGAGEDA PPVVDAYASD EFRMYEFKVR RCSRGRAHDW TECPFAHPGE KARRRDPRKH  120
RYSGAPCPDF RKAGGCKRGD ACDLAHGVFE CWLHPERYRT QPCKDGTTCR RRVCFFAHTP  180
DQLRLVPPQP QQSSTSPNLV SPPASTLISP PTSSVNEIVA SLRQLQLSRG KSVPSSWSLQ  240
TVNDGFASPR GTLAGFNTAF CSLPSTPTVA TAGWLEEVEP AERVESGRAL RAKMFERLSK  300
DSVFDKAEAT PDVGWVSDLL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A5e-119017824116RING finger protein unkempt homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380460.10.0PREDICTED: zinc finger CCCH domain-containing protein 35-like
SwissprotO821993e-98C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLM0RK600.0M0RK60_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P21350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-98C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]