PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P20470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 265aa MW: 28849.9 Da PI: 6.5917

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P20470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	86.8	2.3e-27	97	148	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eCl+NhAaslGgh +DGC+Efmp + +al+CaACgCHR+FHR+++e+ GSMUA_Achr10P20470_001 97 ALRYRECLRNHAASLGGHILDGCCEFMPR-----SDDALRCAACGCHRSFHRKDNET 148 689***********************9.....4579*************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.9E-24	98	146	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-16	98	148	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.3E-23	99	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.468	100	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.85E-20	169	238	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-31	172	239	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-27	178	234	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEFRRQEQEE VYNPTPLQQS AFTRPLPSSS TSLLYVRGGG REGAGDARNG LGSLIQKPTP 60 ISAAPAVSGA LGGGGGGNRT HSTAAAAAIA ATESDTALRY RECLRNHAAS LGGHILDGCC 120 EFMPRSDDAL RCAACGCHRS FHRKDNETDC ALCDLQNGTH GRPSGLLLHA GNSAGASKRF 180 RTKFTAEQKE SMLAFAETVG WKMQKQDDAA VQQFCRDVGV SRQVLKVWMH NNKNSSRKQQ 240 QQQPPPQQEE EEDEEEQPQH EMPED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-28	176	235	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018675514.1	1e-158	PREDICTED: zinc-finger homeodomain protein 6-like
Refseq	XP_018675515.1	1e-158	PREDICTED: zinc-finger homeodomain protein 6-like
Swissprot	Q9SB61	7e-53	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	M0RJX2	0.0	M0RJX2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P20470_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-55	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]