PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P14710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 449aa    MW: 48281.9 Da    PI: 7.5372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P14710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30228286259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YY+C+s+  C ++k+vers++dp + +itY+geHnh+
  GSMUA_Achr10P14710_001 228 SDTWAWRKYGQKPIKGSPYPRGYYKCSSSkACLARKQVERSRTDPGIYIITYTGEHNHP 286
                             79*************************9989***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30214288IPR003657WRKY domain
PROSITE profilePS5081132.971222288IPR003657WRKY domain
SuperFamilySSF1182904.71E-26225288IPR003657WRKY domain
SMARTSM007741.6E-36227287IPR003657WRKY domain
PfamPF031064.1E-25229286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLATTVSLSE NRFRQFHGIN PNSTLLCSVP PNKSQRASHP LSLFRAAVAL PPSLFGQRRR  60
LYAAPGRVIY RRVCSRAVLK ARFPVLGGGD GRRQLGSERR CAELPAVRDS GGGGDDDDDV  120
GHFLVVASAL EAAPGGGGRQ RWRLCAFTGR KPEADQHLGG GRAIQLLVPQ RLATSFHHNH  180
LPAGRRGRVT STPTVPESRP ASLPNPPVQA KSQQKKVVCH VPADGLSSDT WAWRKYGQKP  240
IKGSPYPRGY YKCSSSKACL ARKQVERSRT DPGIYIITYT GEHNHPMPTH RSALAGSTRH  300
KFPSPPCAAA APGDGGERPS TADPEASPLS ATTAAGLSPA TPLTASMDDE PFRSRPEKGE  360
DGVDEEEEVE DEDDEGLLLV EDMEMMGEDD LLFVRSEESG PASATTAEMG ALFDGDAGFE  420
DHLLPLPWLS NCNSNSNSSS SSSCHGCYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-19210289180Disease resistance protein RRS1
5w3x_D3e-19210289180Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018675012.10.0PREDICTED: uncharacterized protein LOC104000813 isoform X1
TrEMBLM0RI970.0M0RI97_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P14710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-48WRKY DNA-binding protein 27