PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P13530_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 20292.7 Da PI: 8.8698 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H GSMUA_Achr10P13530_001 64 FECKTCSRRFPTFQALGGHRTSH 86 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 14.8 | 8.1e-05 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg +F+ L H+r+H GSMUA_Achr10P13530_001 107 HSCPVCGLVFPMGQALGGHMRRH 129 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.97E-8 | 62 | 129 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.36 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.9E-11 | 64 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.889 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-10 | 107 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MQEADTSSVI RPREASVTAG GGREQETGST EMDSLLLMLS CEEKQRGEVG GASRPSGAGG 60 VRQFECKTCS RRFPTFQALG GHRTSHTRPR GRGDGCNPVQ KMRPKLHSCP VCGLVFPMGQ 120 ALGGHMRRHK TAAPDAHAAR EGGARELRWL DLNLPPLENE LQLQSLGFRY TAEGSATRDS 180 SSYSSHSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421349.2 | 1e-136 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | M0RHX9 | 1e-134 | M0RHX9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P13530_001 | 1e-135 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-24 | C2H2 family protein |