PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P13520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 236aa    MW: 26767 Da    PI: 7.4252
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P13520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT++Ed++lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  GSMUA_Achr10P13520_001 15 KGPWTEQEDLQLVWFVRLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 62
                            79********************************************97 PP
2Myb_DNA-binding56.65.9e-1868113148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rgr+T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  GSMUA_Achr10P13520_001  68 RGRMTPQEEHLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 113
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2451062IPR017930Myb domain
SuperFamilySSF466893.06E-2814109IPR009057Homeodomain-like
SMARTSM007173.0E-131464IPR001005SANT/Myb domain
PfamPF002496.0E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-191669IPR009057Homeodomain-like
CDDcd001675.67E-91762No hitNo description
PROSITE profilePS5129426.94563117IPR017930Myb domain
SMARTSM007177.9E-1667115IPR001005SANT/Myb domain
PfamPF002493.0E-1668112IPR001005SANT/Myb domain
CDDcd001672.69E-1070113No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MANAPPTGAA AATRKGPWTE QEDLQLVWFV RLFGERRWDF LAKVSGLNRT GKSCRLRWVN  60
YLHPGLKRGR MTPQEEHLVL ELHAKWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER  120
RTSSAPSPSS SSSSNISELR AEKHEGCSTA EGTSLISGLE VNDNEGKGYT MDQIWNEIAA  180
SESVSQLSFD EYKGGSACNM ECPPVSSPIW EDCSASLWRM EDEDLYPMTD LLLSNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26151174105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421350.11e-176PREDICTED: myb-related protein MYBAS1 isoform X2
SwissprotQ53NK65e-81MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLM0RHX81e-175M0RHX8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P13520_0011e-176(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-79myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]