PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P12910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 159aa    MW: 17676.8 Da    PI: 9.9004
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P12910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.5e-132988463
                            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             k+ +r+++NRe+ArrsR+RK++ ++ L   + +L +eN++  + l+  + ++a+ ++e+
  GSMUA_Achr10P12910_001 29 EKKRKRMISNRESARRSRLRKQKHLDDLMAQANQLRKENSRVLSVLNLTTRHCAAAQAEN 88
                            5999*************************************************9888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-111981No hitNo description
SMARTSM003381.7E-162690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.0942870IPR004827Basic-leucine zipper domain
PfamPF001704.4E-103083IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-113080No hitNo description
CDDcd147025.56E-173182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASPSGASSG SSMFHSSGSS EDLQAAMDEK KRKRMISNRE SARRSRLRKQ KHLDDLMAQA  60
NQLRKENSRV LSVLNLTTRH CAAAQAENSV LRAQTMELSN RLQSLNEMLD IFNGNSISSS  120
SSSFFMGDGF HAIDNSISPW IQSYTTQPIM AAAEHMFHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248RRSRLRK
24249RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421413.21e-113PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L54e-38BZP44_ARATH; bZIP transcription factor 44
TrEMBLM0RHR71e-112M0RHR7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P12910_0011e-113(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-35basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]