PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P11790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 235aa MW: 26007.1 Da PI: 10.2012 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.5 | 8.4e-37 | 25 | 104 | 2 | 81 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 a+k+ ++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti+WLlqqa+ +i+++tg+++++as+ e+++s+++ GSMUA_Achr10P11790_001 25 APKRNSKNDRHTKVDGRGRRVRMPALCAARIFQLTRELGHKSDGETIQWLLQQAESSIIAATGSGTIPASFQESGQSRVN 104 7899*****************************************************************88855555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-31 | 30 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.591 | 31 | 85 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MTSQPNRNAH LAVTAEKGEQ RRHLAPKRNS KNDRHTKVDG RGRRVRMPAL CAARIFQLTR 60 ELGHKSDGET IQWLLQQAES SIIAATGSGT IPASFQESGQ SRVNWATFGR PHPELWLPPV 120 DGFDTSFFHS AAAAMPVASN LPRIGFPALE FPGTNPNQMS FTSLLGGQRP PMPGLELGLS 180 QHGQVRIFNP QALSQFYQHI GQGSDHLHLH QHQQVQQEQH QKSPTPNEKS EVSAE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421054.1 | 1e-154 | PREDICTED: transcription factor TCP20-like | ||||
Refseq | XP_018674496.1 | 1e-154 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 7e-55 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | M0RHF5 | 1e-172 | M0RHF5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P11790_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 6e-57 | TCP family protein |