PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P10800_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29977.9 Da PI: 10.3647 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+++W++Ia+++ gR++k+c++rw++ GSMUA_Achr10P10800_001 19 RGHWRPGEDEKLRQLVEEFGPRNWNSIAEKLK-GRSGKSCRLRWFNQ 64 899****************************9.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 72 | 114 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e+lv a + +G+ W++Iar ++ gRt++ +k++w+ GSMUA_Achr10P10800_001 72 RPFTEQEEERLVAAQQVHGNQ-WALIARLFP-GRTDNAVKNHWHV 114 69*****************99.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.042 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-28 | 18 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-17 | 19 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-12 | 22 | 63 | No hit | No description |
SMART | SM00717 | 1.4E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.538 | 70 | 120 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.7E-14 | 71 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.27E-10 | 73 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 73 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MESTSSASAG SGGTKACRRG HWRPGEDEKL RQLVEEFGPR NWNSIAEKLK GRSGKSCRLR 60 WFNQLDPRIN KRPFTEQEEE RLVAAQQVHG NQWALIARLF PGRTDNAVKN HWHVIVARRH 120 RERSKLVRKR PLQRFQILSD VELSSIHLLP QTYPNPKRSS SVYRRSSQLH DQPPRRYRRL 180 PRWSLVACEE DAKYKKAAPL DSGKCSSESD CCHAVNACEM VGHGDDSDMS IDHRAMNEKT 240 DRRKNVPFID FLGEIFVPNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 19 | 119 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421171.1 | 0.0 | PREDICTED: transcriptional activator Myb | ||||
TrEMBL | M0RH56 | 0.0 | M0RH56_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P10800_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-64 | myb domain protein 52 |