PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 325aa    MW: 35338.6 Da    PI: 7.3334
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.6e-16232269136
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                             C++Cg +   Tp++Rrgpdg++tLCnaCGl ++ kg++
  GSMUA_Achr10P06260_001 232 CHHCGISAksTPMMRRGPDGPRTLCNACGLVWANKGTM 269
                             ****977777*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.5E-1297132IPR010399Tify domain
PROSITE profilePS5132014.33897132IPR010399Tify domain
PfamPF062006.6E-12101131IPR010399Tify domain
PROSITE profilePS5101713.314157199IPR010402CCT domain
PfamPF062032.1E-15157199IPR010402CCT domain
SMARTSM004015.4E-13226279IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.721226274IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15231273IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.24E-15231282No hitNo description
SuperFamilySSF577169.98E-12231277No hitNo description
PfamPF003205.0E-14232269IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSEHPGHHIH ITAADHQALP SAALTAHIDG ASGRNGELIA AADAQALQQY HDADHSSGSV  60
GHGMEEDGVG AMDHEGMETE GPSDPSHLGD AQTLISPQVG GNQLTLSFQG DVYVFDSVSP  120
EKVQAVLLLL GGREMHTGLN PFPSTSVQNR RVNIPHRVAS LMRFREKRKE RNFEKKIRYT  180
VRKEVALRMQ RNRGQFTSSK SKAEDSTGGA TTTDANQNWG SPENKTPGAS ACHHCGISAK  240
STPMMRRGPD GPRTLCNACG LVWANKGTMR DLSKNPAPTT PNALSEPKEG VSLLLAFLLW  300
NHGIYIYIRI NFDSPIDLHT LFHFL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420407.10.0PREDICTED: GATA transcription factor 20
SwissprotQ5Z4U52e-92GAT20_ORYSJ; GATA transcription factor 20
TrEMBLM0RFV30.0M0RFV3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P06260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-73ZIM-like 1