PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P02290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 268aa    MW: 30019.1 Da    PI: 6.3078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P02290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-113176447
                            S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                            WT+eE +++ da +++ g+   +W+++a+ ++ g++  +++s+++ +
  GSMUA_Achr10P02290_001 31 WTQEENKRFEDALAEFDGDspdRWEKVAALIP-GKSVGDVVSHYREL 76
                            ********************************.***********975 PP
2Myb_DNA-binding45.22.2e-14138182347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE++l++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
  GSMUA_Achr10P02290_001 138 PWTEEEHKLFLLGLQKYGKGDWRNISRNLVITRTPTQVASHAQKY 182
                             8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0142681IPR017884SANT domain
SMARTSM007171.0E-72779IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-42977IPR009057Homeodomain-like
SuperFamilySSF466896.73E-122984IPR009057Homeodomain-like
PfamPF002496.5E-93176IPR001005SANT/Myb domain
CDDcd001671.60E-73177No hitNo description
PROSITE profilePS5129419.042131187IPR017930Myb domain
SuperFamilySSF466895.24E-17133187IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-18134185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.1E-12135181IPR009057Homeodomain-like
SMARTSM007171.3E-12135185IPR001005SANT/Myb domain
PfamPF002495.0E-13138182IPR001005SANT/Myb domain
CDDcd001671.79E-10138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMMTSYVDVL PRSSHCTNWF VAEVSCGSGW WTQEENKRFE DALAEFDGDS PDRWEKVAAL  60
IPGKSVGDVV SHYRELVDDV TEIEAGRIPC PVYHGASPFT LDWENNYDSE GWKNSYCLSG  120
GKRSGRRAPD HERKKGVPWT EEEHKLFLLG LQKYGKGDWR NISRNLVITR TPTQVASHAQ  180
KYFLRLNSGS RDKRRSSIHD VTTDDLPNSR PPSPSSSQPC TIATQSSSAM ASASSCQFSE  240
TAVSDQQSEV ACVFDPSSDS SHRNRFTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-142794674RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419913.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-86DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0REQ60.0M0REQ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P02290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.15e-80Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]