PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10043402

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 332aa MW: 36560.7 Da PI: 5.1582

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10043402	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.8	1.8e-48	25	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 + pGfrF+Ptd el+++yL+kk++g++ + evi++v+ +k+ePwdLp k+v ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v s ++ Lus10043402 25 MFPGFRFSPTDVELISYYLHKKIDGHDKCV-EVIPQVEFCKHEPWDLPaKSVIKSETEWFFFSSRGRKYPNGSQSKRATELGYWKATGKERNVRS-GS 120 579**********************777.99***********666667889*********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+k+tLvf+ grapkge+t+W+mhey++ Lus10043402 121 SVIGTKRTLVFHLGRAPKGERTEWIMHEYSM 151 9**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-52	16	166	IPR003441	NAC domain
PROSITE profile	PS51005	50.942	25	168	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	27	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGSTNYVDGG GVSRETQMSI EASSMFPGFR FSPTDVELIS YYLHKKIDGH DKCVEVIPQV 60 EFCKHEPWDL PAKSVIKSET EWFFFSSRGR KYPNGSQSKR ATELGYWKAT GKERNVRSGS 120 SVIGTKRTLV FHLGRAPKGE RTEWIMHEYS MPPSFNHESL VVCRLKKNVD FRGNQSCNGF 180 AEETAERRIM ETYAAECSAK KASSSSASYS NEQMDSVSND SENKLSNNSA TPAAAESSSR 240 HDTGLMDDLC HQGFGFSGRE DDYYADILND DIIKLDETCL ATAAAIPVSR APTADVPETA 300 VADGEAISGE EKELPLWLMS QQVGLAVSPR V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-40	24	168	19	168	NAC domain-containing protein 19
3swm_B	2e-40	24	168	19	168	NAC domain-containing protein 19
3swm_C	2e-40	24	168	19	168	NAC domain-containing protein 19
3swm_D	2e-40	24	168	19	168	NAC domain-containing protein 19
3swp_A	2e-40	24	168	19	168	NAC domain-containing protein 19
3swp_B	2e-40	24	168	19	168	NAC domain-containing protein 19
3swp_C	2e-40	24	168	19	168	NAC domain-containing protein 19
3swp_D	2e-40	24	168	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10043402

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609917.1	1e-113	NAC domain-containing protein 89
Refseq	XP_021609918.1	1e-113	NAC domain-containing protein 89
Refseq	XP_021609919.1	1e-113	NAC domain-containing protein 89
Swissprot	Q9XIN7	5e-85	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A0M5JKF0	1e-111	A0A0M5JKF0_MANES; NAC transcription factors 92
STRING	Lus10043402	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7315	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	1e-86	NTM1-like 8

Link Out ? help Back to Top
Phytozome	Lus10043402

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]