PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043330
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 506aa    MW: 56825.9 Da    PI: 5.3655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043330genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-11161183426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C+f+++tG C++ ++CkF+H+
  Lus10043330 161 EDCSFYMKTGNCRFASNCKFNHP 183
                  89********************9 PP
2zf-CCCH344.9e-11205227527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C++++rtG CkyG  C+F+H++
  Lus10043330 205 ECKYYLRTGGCKYGKACRFSHSK 227
                  8********************95 PP
3zf-CCCH39.68.8e-13256279326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+f++r+G CkyG++C+F+H+
  Lus10043330 256 EKECPFYMRNGSCKYGSNCRFNHP 279
                  689********************9 PP
4zf-CCCH28.72.2e-09393419127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f++tG Cky ++CkF+H++
  Lus10043330 393 PGQPDCSYFLKTGGCKYKSNCKFNHPK 419
                  5789*********************96 PP
5zf-CCCH33.85.9e-11440464226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++  C +++r+G+Ck+G+ C+F H+
  Lus10043330 440 DQDVCAYYSRYGICKFGPACRFDHP 464
                  5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.873157185IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6157184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5157185IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8161183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4163182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652200228IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5200227IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8205227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5205227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6206226IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042253281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6254281IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10256279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5259278IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5392419IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023392420IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7394419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5397418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4398417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6436464IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4438465IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483438466IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8441464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4442463IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEQPESANSF HDPNGTSHIE IQSPSPLDST QDPDPQPSFH HDAPPPVHAA GKDEDELLRQ  60
QVENQLHLRG EEEEETEKKE VQTERDLCYL NGQTTEVDES EEHQLNNGET DGFGEMNVAY  120
LDDHHQMEKE EEEVEEDSKD TRSNGGWMIT QPQFPVRPEA EDCSFYMKTG NCRFASNCKF  180
NHPVKRKTQV TRERFKETEE SGQIECKYYL RTGGCKYGKA CRFSHSKVKT VAVPAKSPLV  240
PFLEFNFLGL PIRLGEKECP FYMRNGSCKY GSNCRFNHPD PTVVGGNEPS SAVGNGPSLH  300
ASSHSNIPSW SPPPPRPALN EAAPFVPVMF PPNQGTNSRN LDWNGYQAPV YPPPERVTPP  360
PPPAYVMTNP LSETNFYTRH QQLMTVDEYP ERPGQPDCSY FLKTGGCKYK SNCKFNHPKV  420
RIAKSPSCVL SDKGLPLRPD QDVCAYYSRY GICKFGPACR FDHPIQADSP TGSLDGHQFH  480
GFENSASDEE DHRLAEKAKE IKISN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8299220.0EU829922.1 Linum usitatissimum clone LU0013G12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079920.11e-161zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC51e-118C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A067KGL01e-160A0A067KGL0_JATCU; Uncharacterized protein
STRINGLus100433300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-115C3H family protein