PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043240
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 253aa    MW: 26751.8 Da    PI: 5.7737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043240genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1964114155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Lus10043240  64 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 114
                  68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-1364114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3065124IPR001471AP2/ERF domain
PROSITE profilePS5103222.85365123IPR001471AP2/ERF domain
SMARTSM003805.2E-3565129IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2065123IPR016177DNA-binding domain
CDDcd000188.72E-2966123No hitNo description
PRINTSPR003673.8E-106677IPR001471AP2/ERF domain
PRINTSPR003673.8E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAAADSPPPP TAYSSSSFGF SGQPVPNPEP DKTNYNNINI KSKLKRGRGD DGGRGSGTTT  60
TKHPVYRGVR MRTWGKWVSE IREPRKKSRI WLGTFATPEM AARAHDVAAL SIKGPTAAIL  120
NFPQLSASLP RPVSSSPRDV RAAALKAASM DFFPDAAAAT PEELSEIVEL PSLQGSETGC  180
LSDESKAAAA AAAELVDEFV LYGDSWLYDR TWYGDYCSAV GEYFSDGGML SLLPESGNGG  240
GGSGCGISLW QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1950124273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514246.14e-58ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1L6CAX35e-57A0A1L6CAX3_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLB9RKK29e-57B9RKK2_RICCO; Transcriptional factor TINY, putative
STRINGLus100432400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]