PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10043234 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 183aa MW: 20832 Da PI: 6.793 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8.3e-14 | 72 | 175 | 2 | 96 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.se 89 +k+lt sdv+ s +rl+l+k++a++ ++ +++ +t++d +g+++ +kl+ + + yvlt+GW+ F++a++L D v + +r ++ Lus10043234 72 EKQLTESDVNPSqARLSLSKDYARDSilpllnsTEDVVRGIRVTVYDADGKEFPMKLKLWAEK-VYVLTSGWRPFAEAHRLVsHEDYVAVWVFRRlDT 168 79*******98879*********999***998844446999****************999986.8****************94445443333345566 PP E..EEEE CS B3 90 felvvkv 96 ++l+v v Lus10043234 169 GSLCVAV 175 6666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.53E-14 | 71 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.9E-6 | 71 | 179 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.65E-16 | 71 | 175 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-16 | 71 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.2E-10 | 72 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.348 | 72 | 179 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEEDNKELSR AALQLIVLMY SKPERQKALP IPPDEKIPKL TREQHWRPPP IRPPAIPGLP 60 EFLIGECTEP YEKQLTESDV NPSQARLSLS KDYARDSILP LLNSTEDVVR GIRVTVYDAD 120 GKEFPMKLKL WAEKVYVLTS GWRPFAEAHR LVSHEDYVAV WVFRRLDTGS LCVAVTSRQL 180 PV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10043234 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448606.1 | 4e-45 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A0D2U806 | 9e-44 | A0A0D2U806_GOSRA; Uncharacterized protein | ||||
STRING | Lus10043234 | 1e-131 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10043234 |