PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10042531

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 383aa MW: 43277.4 Da PI: 9.2073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10042531	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.5e-52	12	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+ +yL+kk++++++++ ++i++v+iyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++ Lus10042531 12 LPPGFRFHPTDEELILHYLHKKLSSSPFPV-SIIADVNIYKFDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAARSGYWKATGTDKVISVAlpg 108 79**************************.89***********988899**********************************999998 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g+kk Lvfykgr pkg kt+W+mheyrl Lus10042531 109 hasqDNIVIGVKKALVFYKGRPPKGIKTNWIMHEYRL 145 87766667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-63	3	181	IPR003441	NAC domain
PROSITE profile	PS51005	60.503	12	181	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	13	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MVMMQQSPQS SLPPGFRFHP TDEELILHYL HKKLSSSPFP VSIIADVNIY KFDPWDLPAK 60 ATFGEKEWYF FSPRDRKYPN GARPNRAARS GYWKATGTDK VISVALPGHA SQDNIVIGVK 120 KALVFYKGRP PKGIKTNWIM HEYRLSDSPS YIANPNNKPI RPKDFSSMRL DDWVLCRIYK 180 KSHPNSSHQH HHPQSVTTAA SVASTTSDPH QEDDEDHRQR YLVSQPSSKS PTITNQTALW 240 PQKSSFFSNS FDATDYSLLS NFLSDPQFII NPPPPLIEVT DSIVTTTTTT MNQQESNNLG 300 YLHHKVLPDH QSTGMMTSTR PKRDRSNGDQ DVSMGTYSKK PMTSNFINAS GSYDYDDQYG 360 GFVNQAVLNH NLLMSHHLQF QG*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MVMMQQSPQS SLPPGFRFHP TDEELILHYL HKKLSSSPFP VSIIADVNIY KFDPWDLPAK  60
ATFGEKEWYF FSPRDRKYPN GARPNRAARS GYWKATGTDK VISVALPGHA SQDNIVIGVK  120
KALVFYKGRP PKGIKTNWIM HEYRLSDSPS YIANPNNKPI RPKDFSSMRL DDWVLCRIYK  180
KSHPNSSHQH HHPQSVTTAA SVASTTSDPH QEDDEDHRQR YLVSQPSSKS PTITNQTALW  240
PQKSSFFSNS FDATDYSLLS NFLSDPQFII NPPPPLIEVT DSIVTTTTTT MNQQESNNLG  300
YLHHKVLPDH QSTGMMTSTR PKRDRSNGDQ DVSMGTYSKK PMTSNFINAS GSYDYDDQYG  360
GFVNQAVLNH NLLMSHHLQF QG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-70	9	181	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-70	9	181	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-70	9	181	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-70	9	181	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-70	9	181	17	168	NAC domain-containing protein 19
3swm_B	6e-70	9	181	17	168	NAC domain-containing protein 19
3swm_C	6e-70	9	181	17	168	NAC domain-containing protein 19
3swm_D	6e-70	9	181	17	168	NAC domain-containing protein 19
3swp_A	6e-70	9	181	17	168	NAC domain-containing protein 19
3swp_B	6e-70	9	181	17	168	NAC domain-containing protein 19
3swp_C	6e-70	9	181	17	168	NAC domain-containing protein 19
3swp_D	6e-70	9	181	17	168	NAC domain-containing protein 19
4dul_A	5e-70	9	181	14	165	NAC domain-containing protein 19
4dul_B	5e-70	9	181	14	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10042531

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628145.1	1e-119	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	1e-100	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A0B0NJB6	1e-118	A0A0B0NJB6_GOSAR; NAC domain-containing 29-like protein
STRING	Lus10042531	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-96	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Lus10042531

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]