PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042406
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 339aa    MW: 37882.3 Da    PI: 8.016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042406genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-1217921398
                 TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                 ++rl +p  f  ++ + +   +   +l+++sg+ + v++     s+r +  +GWkeFv ++ L +gDf+vF+++++ + f   v++f+
  Lus10042406 17 EHRLAIPVAFS-KYlD-D---GEAAVLRSSSGKCYPVNI-----SCRDFKDEGWKEFVADHSLHVGDFLVFRYTNThKVF--DVMAFD 92
                 578*******8.7743.3...2369**************.....44445689********************99865555..666665 PP
2B346.85.2e-15155252496
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  v+++s +l++++l +pk fa++++++  +++ ++l +e+g+sW+  li       +k +++ vl +G ++F ++n+Lk gD++ + l++  ++++v+k
  Lus10042406 155 VTIRSGNLEKKNLHIPKAFARNNDLEWIGPRSVILLNEEGKSWQADLIGykkishSKLGRQAVLNRGINRFLEENRLKLGDTFSLGLVQ-GGKNPVFK 251
                  677899999**************888889999***************76666665666666*************************998.67778887 PP

                  E CS
           B3  96 v 96 
                  +
  Lus10042406 252 M 252
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-16396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-173101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.743594IPR003340B3 DNA binding domain
CDDcd100173.50E-18692No hitNo description
SMARTSM010198.4E-8894IPR003340B3 DNA binding domain
PfamPF023626.5E-101788IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-14149251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-12150251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-10151251No hitNo description
PROSITE profilePS5086310.532152256IPR003340B3 DNA binding domain
SMARTSM010194.1E-10153256IPR003340B3 DNA binding domain
PfamPF023622.1E-13154252IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-10257318IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-9257318IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3258320IPR003340B3 DNA binding domain
PfamPF023629.9E-8258315IPR003340B3 DNA binding domain
PROSITE profilePS508639.798259320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADGNPHFFR PLLPGFEHRL AIPVAFSKYL DDGEAAVLRS SSGKCYPVNI SCRDFKDEGW  60
KEFVADHSLH VGDFLVFRYT NTHKVFDVMA FDPSACEFQY PPSFSSPAFH ASVGTEHTNE  120
EALENGRDHP RPTYGKDQVK EKGGFYVLKS PSFVVTIRSG NLEKKNLHIP KAFARNNDLE  180
WIGPRSVILL NEEGKSWQAD LIGYKKISHS KLGRQAVLNR GINRFLEENR LKLGDTFSLG  240
LVQGGKNPVF KMSGVTCAMT LRNYRGSCYS AILKSIKDRA ACIGSGWKEV VKENGIQEGD  300
ILMFELVETG TKPVMTFKVV LQEEIRVKEE EGCVMSTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100424060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16161410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-34B3 family protein