PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041822
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 364aa    MW: 41589.5 Da    PI: 5.4542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041822genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.9e-5471381129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv +yL+kkv ++k++l +vi+++d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ 
  Lus10041822   7 VPPGFRFHPTDEELVGYYLRKKVGSQKIDL-DVIRDIDLYRIEPWDLQErcRIGYeEQHEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDD 103
                  69****************************.9***************953433332566*************************************97 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   ++ l+g++ktLvfy+grap+g+ktdW+mheyrle
  Lus10041822 104 kTKLLIGMRKTLVFYQGRAPNGHKTDWIMHEYRLE 138
                  34455****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-595158IPR003441NAC domain
PROSITE profilePS5100559.1177158IPR003441NAC domain
PfamPF023651.4E-288137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MESSSCVPPG FRFHPTDEEL VGYYLRKKVG SQKIDLDVIR DIDLYRIEPW DLQERCRIGY  60
EEQHEWYFFS HKDKKYPTGT RTNRATMAGF WKATGRDKAV YDDKTKLLIG MRKTLVFYQG  120
RAPNGHKTDW IMHEYRLESD HDAPPQEEGW VVCRAFKKRS TNKRIEGCSS YNLQQYEESS  180
NDPIIDHHYY TAPPPPRQPS MPRHHQSNSF LMAQQGSSLL CKQEIILNDT IIRPADTTNT  240
TFSTAFLDDS AESFLNELPQ LESPNSLPLM MKRPMTASTS SSADIDNTNK MMIGGKVRDW  300
RDLDKFVASQ LSQNDDELYY NNNVGGESSS GLELPELLVL ESESGFFSSN SGPCDIGICL  360
FDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-47216010170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041822
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636223.11e-131NAC domain-containing protein 37-like isoform X1
RefseqXP_021636224.11e-131NAC domain-containing protein 37-like isoform X2
RefseqXP_021636225.11e-131NAC domain-containing protein 37-like isoform X2
SwissprotQ9SL411e-119NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2P6RLX51e-129A0A2P6RLX5_ROSCH; Putative transcription factor NAM family
STRINGLus100418220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-117vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]