PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SRS | ||||||||
Protein Properties | Length: 232aa MW: 24640.8 Da PI: 9.1452 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 118.1 | 1.2e-36 | 145 | 221 | 4 | 78 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel 78 g++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpaakrrerqqq++ +s ++ ++ ++ +kr+r+ Lus10041802 145 GGISCQDCGNQAKKDCSHSRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQQHHVTSVQQPHQqqHQVVPKRPRDP 221 789**********************************************9888776654443332266677888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.8E-33 | 146 | 220 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.1E-27 | 148 | 190 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAGLFSLGGG GGGGGGRGSS GNTNNNNNNN NTEITPESNN NSSWFGSWYR PPPNTTEDNF 60 PSSSSSRPAA ALELWQQQQQ QAELMQRQQD LYSSAAGLGV GLTHHHLYLS ADHPSSRSAA 120 ALMMMRPGGG GGGGRGSSST SNVGGGISCQ DCGNQAKKDC SHSRCRTCCK SRGYDCQTHV 180 KSTWVPAAKR RERQQQQHHV TSVQQPHQQQ HQVVPKRPRD PTSSSLVSPP D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041802 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022775373.1 | 1e-46 | protein SHI RELATED SEQUENCE 1-like isoform X3 | ||||
Refseq | XP_022775374.1 | 7e-47 | protein SHI RELATED SEQUENCE 1-like isoform X4 | ||||
Refseq | XP_022775375.1 | 7e-47 | protein SHI RELATED SEQUENCE 1-like isoform X5 | ||||
Refseq | XP_022775376.1 | 3e-47 | protein SHI RELATED SEQUENCE 1-like isoform X6 | ||||
TrEMBL | A0A1J3F6G5 | 4e-45 | A0A1J3F6G5_NOCCA; Protein SHI RELATED SEQUENCE 1 | ||||
STRING | Lus10041802 | 1e-169 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25300 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-28 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Lus10041802 |