PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041740
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 627aa    MW: 68543.4 Da    PI: 4.6721
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041740genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.12e-1112586262374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + LlecA+ +s++++e a + L +++  as++g+p++R+a yf eAL +rl++   +  +++++ et+   s+e + ++k +++++P+ kf+hltaN
  Lus10041740 258 LQSLLECAR-LSESETESAVKSLVKIRVSASEHGNPTERVAYYFSEALYNRLSK---QAGESFTMFETT---SEEFTLSYKSLNDACPYSKFAHLTAN 348
                  689******.56668899999999*****************************9...777777777777...999*********************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++Hi+Df++ qG+QW+aLlqaLa+R++g+p  +Ri g+ +p+ g   + +l +tg+rL +fA+ l+++fef++ + + ++dl+ + +
  Lus10041740 349 QAILEATETATKIHIVDFGVVQGVQWAALLQALATRSAGKPvLVRISGIPAPALGssPAASLFATGKRLLDFAKLLDLNFEFEP-ILTPIQDLNESCF 445
                  *************************************8888689********999889999***********************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+p+E+l Vn++lql++llde++++ +   + L++ ksl+P++v++ e e+++n+  +l+rf +al+yysa+f+sle +l+r+s er  vEr+llgr
  Lus10041740 446 RVEPDEVLTVNFMLQLFNLLDETTATVE---TALRMAKSLNPRIVTLGEYEVSLNRIGYLTRFNNALKYYSAVFESLEPSLSRDSTERLEVERMLLGR 540
                  *********************9999999...9****************************************************************** PP

         GRAS 293 eivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  v+  e+    +rer+e  e+Wr  +e++GF++v+ls++a++qak ll +++ s  y++ e++  +v l Wk+ pL++vS+Wr
  Lus10041740 541 RIAGVIGPEEPGvvQRERMEDREQWRLLMEKCGFESVALSNYAMSQAKILLWNYNySPRYSLVESKPGFVsLAWKEVPLLTVSSWR 626
                  *******998876699***************************************9999*******99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.272231604IPR005202Transcription factor GRAS
PfamPF035146.8E-109258626IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQREQEQQ QQNHHQQQQQ QILGMTTSFP LTPWPGSTPA  60
NPNLGYGLPA APGFSDPFQV PPATDAAEVG FPFPQIDHHH AGGGGTGFRF SDFGGGAPGE  120
FDSDEWMDSL MGGGDSTDSS NLPSACDTWQ SNPADFCLYS SDSFRLNVAC SPSSDLNRIL  180
FPEPALKAQN PIQPLPTWNP PSSPPPPPPE AAATAAVKEV KSANTSPPPP SPPVPKPPAG  240
PTVCSNLLEI EPSSPPLLQS LLECARLSES ETESAVKSLV KIRVSASEHG NPTERVAYYF  300
SEALYNRLSK QAGESFTMFE TTSEEFTLSY KSLNDACPYS KFAHLTANQA ILEATETATK  360
IHIVDFGVVQ GVQWAALLQA LATRSAGKPV LVRISGIPAP ALGSSPAASL FATGKRLLDF  420
AKLLDLNFEF EPILTPIQDL NESCFRVEPD EVLTVNFMLQ LFNLLDETTA TVETALRMAK  480
SLNPRIVTLG EYEVSLNRIG YLTRFNNALK YYSAVFESLE PSLSRDSTER LEVERMLLGR  540
RIAGVIGPEE PGVVQRERME DREQWRLLME KCGFESVALS NYAMSQAKIL LWNYNYSPRY  600
SLVESKPGFV SLAWKEVPLL TVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502546261375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041740
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075848.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A067KR640.0A0A067KR64_JATCU; GRAS22 protein
STRINGLus100417400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-166GRAS family protein