PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 363aa MW: 39212.9 Da PI: 9.6017 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 9e-30 | 191 | 249 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed++vv+ tYegeHnh+ Lus10041660 191 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQSVVVATYEGEHNHP 249 8***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-29 | 180 | 251 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.968 | 185 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 188 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-34 | 190 | 250 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-24 | 191 | 249 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDYSPSLVDI SLDLNLNPRR HVDDVPSTAA AASQKKEWSF GVLPASSTPS NFIGLGMKVS 60 PPATTKDESS SSSSALVEEL NRVSAENKKL TEMLAVMCEN YNAMRNQLMD YMSRKEEDKE 120 QNSRSSPSRK RKSESSNTIT NNLPINGANG ASESSSTDEE SFKRPREEVI KAKISRVYVR 180 TETSDSGLIL KDGYQWRKYG QKVTRDNPCP RAYFKCSFAP SCPVKKKVQR SVEDQSVVVA 240 TYEGEHNHPH PSVPDQAATA SSRSLAIPGP ASRAGPSTMA ADLAKSKTSP SSVRNAVAAA 300 AAARSAVVAT DTPRAGGADG REVRQLLVEQ MANSLTQDPK FTAALAAAIS RIMLQQSHSQ 360 KW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 189 | 252 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 189 | 252 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 132 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041660 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ884111 | 1e-109 | HQ884111.1 Linum usitatissimum clone Contig1275 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628322.1 | 1e-121 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-91 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A140H8T3 | 1e-120 | A0A140H8T3_MANES; WRKY transcription factor 79 | ||||
STRING | Lus10041660 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-85 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Lus10041660 |