PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 27101.7 Da PI: 8.7553 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.3 | 5.3e-35 | 18 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra..tksgyWkatgkdkevlsk 95 lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+e+d+++++P +Lp + + ++ yfF+k++ + a g+r + gyWk+t k ++++s+ Lus10041534 18 LPIGVRFRPTDEELIVHYLRRKVLGLPLPA-SVISELDVFHTHPCSLPGNS-SCWEKRYFFCKKEGNVAgAGNRGGGVsgCGGGYWKHTRKARHIVSS 113 699***************************.99***************433.345677*****99988734666655423459**************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg++++Lvf k++a++ ++t+Wvmhe+ l Lus10041534 114 scNNQLVGMRTSLVFRKQNASHHSNTKWVMHEFCL 148 999999***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-41 | 15 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.014 | 18 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-21 | 19 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEAKQNMVVN GGGGIKVLPI GVRFRPTDEE LIVHYLRRKV LGLPLPASVI SELDVFHTHP 60 CSLPGNSSCW EKRYFFCKKE GNVAGAGNRG GGVSGCGGGY WKHTRKARHI VSSSCNNQLV 120 GMRTSLVFRK QNASHHSNTK WVMHEFCLVG LATIPFTNQV AKVQLGDWVV CSVFQKKKRH 180 SNSNMKKPPN PIEFRMEELS DRGPEEEEEP GSPCSSGVTE LSNSTSYSSN GVDGEGDINS 240 FNVSFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-25 | 18 | 177 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-25 | 18 | 177 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-25 | 18 | 177 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-25 | 18 | 177 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-25 | 18 | 177 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-25 | 18 | 177 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-25 | 18 | 177 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041534 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021643874.1 | 1e-62 | NAC domain-containing protein 83-like | ||||
TrEMBL | B9RH27 | 3e-61 | B9RH27_RICCO; Transcription factor, putative | ||||
STRING | Lus10041534 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 3e-33 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Lus10041534 |