PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10041328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 223aa MW: 24362.9 Da PI: 11.2999 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 80.9 | 3.4e-25 | 37 | 137 | 4 | 104 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg....kaaksaa 95 k+++ ++h kv+gR+ RvRl+a+caar+F+L++eLG+ +d++t+eWLl+ ++ +tss+s +++ ssss ++ +a ++ Lus10041328 37 NKSSNRDRHRKVDGRGTRVRLPALCAARIFQLTRELGHRTDGQTVEWLLNHVPHSHFPSDQTSSPSLvaNSV--LSSSSRTE----MrprkRAIPEPD 128 68999***********************************************99998888884444322222..12222222....112222222222 PP TCP 96 kskksqksa 104 ++++s+++a Lus10041328 129 SGSSSSSPA 137 222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-19 | 40 | 87 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 19.514 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDVLKKSLRR VKKKKTLKIF THTAPPPPQP LLPVSSNKSS NRDRHRKVDG RGTRVRLPAL 60 CAARIFQLTR ELGHRTDGQT VEWLLNHVPH SHFPSDQTSS PSLVANSVLS SSSRTEMRPR 120 KRAIPEPDSG SSSSSPAPPH TNIPPESSST TIMPPIATPP ASTAPLPPPP PMITPMTALE 180 RRRMKEEPKA AGPSSDFELF RGPDVGLGNL SFTSLLMQWD KD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10041328 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10041328 | 1e-157 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22597 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 7e-22 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10041328 |