PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041313
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 288aa    MW: 32392 Da    PI: 8.3435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041313genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.6e-20206239134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+Cg+++Tp+WR+gp g+ktLCnaCG++yr+ +
  Lus10041313 206 CSHCGVSETPQWREGPLGPKTLCNACGVRYRSGR 239
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.14E-15199262No hitNo description
PROSITE profilePS5011412.426200236IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-17200254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.0E-15204237IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.10E-16205254No hitNo description
PfamPF003206.7E-18206239IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNDSWFDNNF CELTDEIFES FNYLDLPIED VEPAGEEEDW RTKFQDVKPP SAFLPSFSSD  60
ICSAGCKDLK KESFQFKQCS PSPEEASYGR SISIQCDSSE RNQSQHFRTS SPISVLESSS  120
SSCSAENPRV AKRPRSKGLR SRRCTYELVN PSSFVSRMLP PLGEFQSEYD SYLDKKMSSG  180
LVENNRRRKR KKKNLMLRSS GETRECSHCG VSETPQWREG PLGPKTLCNA CGVRYRSGRL  240
FLEYRPAASP TFSPSLHSNS HRKVLELRKR SFAGSNGQNG STPEANA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184191NRRRKRKK
2186192RRKRKKK
3187191RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8859081e-82HQ885908.1 Linum usitatissimum clone Contig1835 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384911.28e-67GATA transcription factor 11 isoform X1
RefseqXP_011040891.11e-66PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLA0A2K2AY202e-65A0A2K2AY20_POPTR; GATA family protein
STRINGLus100413130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-40GATA transcription factor 11