PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040914
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 327aa    MW: 36798.8 Da    PI: 7.226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040914genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12186211126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Lus10040914 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12186216IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.0E-14258307IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.06E-13265309No hitNo description
PfamPF139201.1E-8265306No hitNo description
SMARTSM001849.4E-5266303IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.822266304IPR001841Zinc finger, RING-type
CDDcd001628.05E-9266307No hitNo description
PROSITE patternPS005180281290IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAESGDSQKP EQVCNFFRKP SKNKNIRKRA IVEDDAEDSN TESSVLNNQK KAPKADNKLY  60
FSTGPSKSSK SSESDSGNAK SIFQFESSKE IQVQNDNRAT ATLETETDFS RDARAIRERA  120
LKQAEEGLNS KKPSSSNEKL YKGAHGYTDH KAGFRREQTI ASEKAGGSHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWEEVEK ARKRRLAMGG  240
GDEEGQLLEA EADDDDEDED ALPFACFICR EPFEDPVMTK CKHYFCEHCA LKHHSKNKKC  300
FVCNKPTLGI FNTAHEIRKR IAEAGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-601132112317RING finger protein 113A
5z58_M2e-601132112317RING finger protein 113A
6ff4_t2e-601132112317RING finger protein 113A
6ff7_t2e-601132112317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022958735.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-166C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A199UC170.0A0A199UC17_MANES; Uncharacterized protein
STRINGLus100409140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein