PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040840

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WOX

Protein Properties

Length: 279aa MW: 30719 Da PI: 8.6016

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040840	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	24	82	4	57
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+t+t+ q++ Le l+++ r+p+ ++++++A+ l +++ ++V++WFqN++a++++ Lus10040840 24 RWTPTSPQINLLEGLYNQgLRTPTPDQIQQIAAMLsthgHIEGKNVFYWFQNHKARQRQ 82 ***************99************************************96 PP
2	Wus_type_Homeobox	108	5.5e-35	22	83	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RWtPt+ Qi++Le ly++GlrtP+ ++iq+i+a+L+++G+ie+kNVfyWFQN+kaR+rqk Lus10040840 22 NFRWTPTSPQINLLEGLYNQGLRTPTPDQIQQIAAMLSTHGHIEGKNVFYWFQNHKARQRQK 83 67***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.317	18	83	IPR001356	Homeobox domain
SMART	SM00389	2.9E-5	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.23E-12	23	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-7	24	82	IPR009057	Homeodomain-like
Pfam	PF00046	8.4E-17	24	82	IPR001356	Homeobox domain
CDD	cd00086	4.56E-6	24	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDTNNPAAAN KKNATSSRIP ANFRWTPTSP QINLLEGLYN QGLRTPTPDQ IQQIAAMLST 60 HGHIEGKNVF YWFQNHKARQ RQKLKQDVII NNNINHNNNL PFVNHHPHHH FLRKPPLPPP 120 SPHGVVRHVP SPSPGHCGTS SYNTSSQADL GMPRRPQEFR VVPAGGLTQI RSAEKISWRT 180 ATAAAHRIVP DTLNNNDGGT YNYDCDTDQE TLPLFPLHPT GGLLARSSTS SSSDNNLCSS 240 PSYSSCDTGV DVEDGDSGRR CFDFFSLGQG HLCPSQRY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040840

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10040840	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8256	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	6e-28	WUSCHEL related homeobox 2

Link Out ? help Back to Top
Phytozome	Lus10040840