PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040662
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 398aa    MW: 43613.7 Da    PI: 7.9242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040662genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.7e-074364526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C+ f+++  C+ Gd+C +aHg
  Lus10040662 43 PCPEFRKGSSCRQGDSCEYAHG 64
                 8******99************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00193865IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-43866IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-44364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1834366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-472102IPR000571Zinc finger, CCCH-type
SMARTSM00356307497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYSFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRKYLYT CVPCPEFRKG SSCRQGDSCE  60
YAHGIFECWL HPAQYRTRLC KDETNCNRRV CFFAHKTEEL RPLYASTGSA VPNSPGGPSN  120
ATSFSGNGFD IGSLTPPPLT SPGGGSPGWP TSVITPPPPQ LQLPGSRLKS SLSARDIDVD  180
MDFLGIEAHR RRKQLMDEFA GLSSPSDWTG ERTGEFNKIG GLNLNPTSLE DIYGAVDHPL  240
LLSQLQDMKL KLRSTYPAAF PSSPAMDQTG FNNNSGRAAA FAKRSQSFVG RSSVNHHPIG  300
FPTSPGKLSD WGSPDGKLEW KIQGEELSRF RKSASFAYRS SSNGNFGEPD LGSGMRSGQM  360
GVGGPNQQQG HPDIGIPEMQ PAWMEQFYSE TEQMVAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744460.0JX174446.1 Linum usitatissimum clone LuBAC375M9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604126.11e-156zinc finger CCCH domain-containing protein 66-like
RefseqXP_021604127.11e-156zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ41e-111C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2C9WD671e-155A0A2C9WD67_MANES; Uncharacterized protein
STRINGLus100406620.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-106C3H family protein