PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040556
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 282aa    MW: 31107.8 Da    PI: 9.0869
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040556genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.84e-10221240120
         GATA   1 CsnCgttkTplWRrgpdgnk 20 
                  Cs C+ttkTplWR+gp+g+k
  Lus10040556 221 CSDCNTTKTPLWRSGPQGPK 240
                  ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0042215255IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-5216239No hitNo description
Gene3DG3DSA:3.30.50.102.0E-7219238IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.394219238IPR000679Zinc finger, GATA-type
PfamPF003201.8E-7221240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMNSNYQYSS HQFPPFSIDL NQDHQHYLNA HYFTTAITTA TTTTSSSPSS SSSSPLPNYH  60
IFINPPPPAT QYSGEDTDPG GHLDYSSWGL PPPAAAAAAA SFHQYHQPPQ ILLQKGGSSC  120
MYDQEMVEVV DYNHNGSLDK MEKEMSYDVV SPKLRIMNQK KKKLTIKTNV KKPNNLNDVQ  180
SPSTLQLQPA AMTDNTTNTT TMTTTTSSNS PTAGSPTVRV CSDCNTTKTP LWRSGPQGPK  240
DKIDMMHCWA SVMKECGRKS SVLANWARRK RRRVTRLDVA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272RKRRR
2269273KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100405560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-10cytokinin-responsive gata factor 1