PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040548
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HRT-like
Protein Properties Length: 430aa    MW: 47604.2 Da    PI: 10.2346
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040548genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.41e-17275305131
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  +CG+i+ dG++C+ +Pv gRKRC+eHKGmRi
  Lus10040548 275 VCGFIMVDGIPCTIPPVVGRKRCQEHKGMRI 305
                  7*****************************7 PP
2HRT-like33.19.6e-11346375231
     HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                  CG+ l +Gs C+r P kg+ RC++H G +i
  Lus10040548 346 CGAGLVNGSLCRRWPQKGNERCWQHQGNKI 375
                  **************************9876 PP
3HRT-like52.77.2e-17393422130
     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                  +CGv l +G  C r Pv+gRKRC +HKGmR
  Lus10040548 393 TCGVPLLNGWACVRAPVPGRKRCLQHKGMR 422
                  7***************************** PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MADAAKSGAL IGGKLKREDC NRTKHDSHFS RWQVLIGASD WADYLSGKEG AARYRVHNLP  60
WASFAGVYEL GIAIGRMGSS RGVEKHEIVV VYLGQAENVR TRLQRYGRTG AHLESRKDDH  120
HPTITHNNKG ISLFQEIFLR GHSIVFRWAA MKNKKAAEKT ESELLNTFDY AWNRGGNGAR  180
RPDEILHKLD RISSSSTAAI AKLKDISKRL MSFGQAAVGI KIEAIANPQK LKTEDDADGI  240
NKFFARVFKF NRSKPRLVVS DSYRIPDDKY NSGNVCGFIM VDGIPCTIPP VVGRKRCQEH  300
KGMRIYGAVN NTCSSAIKAT TVEEDELSKF TTDIDGRGSQ LNDKLCGAGL VNGSLCRRWP  360
QKGNERCWQH QGNKIVNANA NVTNDDLLFT APTCGVPLLN GWACVRAPVP GRKRCLQHKG  420
MRLQPSASR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021646319.11e-121protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLW9R5X11e-118W9R5X1_9ROSA; Uncharacterized protein
STRINGLus100405480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.19e-85effector of transcription2