PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040404
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 536aa    MW: 59580.8 Da    PI: 6.2587
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040404genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16434466133
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                  C++C +tkTp+WR gp g  tLCnaCG+++ k 
  Lus10040404 434 CVHCEATKTPQWRAGPMGANTLCNACGIMQVKL 466
                  ****************************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1113129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-715120No hitNo description
Gene3DG3DSA:2.40.330.101.0E-916122IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-416122IPR003340B3 DNA binding domain
SMARTSM004011.6E-14428479IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648428485IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-14432468IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-15432491No hitNo description
CDDcd002021.25E-12433481No hitNo description
PROSITE patternPS003440434459IPR000679Zinc finger, GATA-type
PfamPF003204.7E-14434467IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSSSGQPSVR RGLLRFYKIV TTDSLRDRKL MLPKVVRKRL ILMQGNNGGS DFLSNRTATI  60
FVVNERGLSW EMELWNDEEQ GRLWLRNGFH EFAVFYSLAD CHLLRFKHLS DFTFSVQIHD  120
RSASEIDYPS SLPADDRGQE PQPDDDDDDS DDDNDSDFEI STGVPPPSFL SPFPQRTMVG  180
NTQTPSKLSC VDELDCGSFF GQIDDLIDIP SDDIDAVADE TKNYGGSDDL SDALYVPDDD  240
IGQLDMLTSA VEDSGFLTVN DSVNKNLSRS AIWFRFRTSS PISVLNSSGD HQKPASSCRE  300
EANVPPRKRG RPREKWSSPI SVLDSSGDQK PTSSCSMEAN VAPSKRECSS LSSVLDSSGD  360
QKPASPCIVE ANVALGRRGR PPCKKFCPCC YFPRPRSEMQ RTNSEQKKIK KKKKRMEVMN  420
AEPGQQQQQG VRKCVHCEAT KTPQWRAGPM GANTLCNACG IMQVKLGRLL PEYRPANSPT  480
FVPSLHSNVH KMVLQMRTNT NATTNDGDLQ VKNAHSPELL IPNLNSNLAM DRCVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406414KKIKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100404040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-29GATA family protein