PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040083
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 233aa    MW: 25485.9 Da    PI: 6.3956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040083genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001189111123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C + F++   L  H+++H
  Lus10040083  89 YTCTFCRREFRSAQALGGHMNVH 111
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-686115No hitNo description
PROSITE profilePS5015711.15789116IPR007087Zinc finger, C2H2
SMARTSM003550.006689111IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-589112IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MASELGFLAL THLQNNNDQN QNQNQKQQNR RGHQQAARPQ LGNNNGGAAS TWVWNPKRTE  60
EAEGEEEEES WEVRAFEEDA GNVWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRAKLHH  120
PLPLPRPGVP SSTAVASSSA SSSSTYIIPT PEYSSSAGGL CLLYQFPNPN NHAVGGGGTF  180
NPPNKIAWGA ATGGGNSPST VLSMTPNNSQ PCYTGRKEME REEEELDLEL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-1384111229superman protein
2l1o_A4e-1384111229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040083
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084484.11e-53zinc finger protein 1
TrEMBLA0A067JUG63e-52A0A067JUG6_JATCU; Uncharacterized protein
STRINGLus100400831e-172(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-21C2H2 family protein