PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10039303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 641aa MW: 71833.8 Da PI: 9.9845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.8e-15 | 31 | 116 | 9 | 99 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d +++g l lp +faeehg++ ++ l+ ++g +W v + ++ +++++++ +GW +F+k L+ f+vF+l +rs f +v++f++ Lus10039303 31 DPFRKGKLKLPEDFAEEHGSE--LANEVLLNLPNGAEWPVSV-VKSGRKKIWFDNGWTKFAKFYSLEPTHFMVFQLADRSHF--NVMIFDT 116 5578899***********966..6779***************.4555556**************************999999..9999987 PP | |||||||
2 | B3 | 35.6 | 1.6e-11 | 197 | 297 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 f v+ + + +rl +p +f e++ ++++ ++ l+ ++ +W+ ++ + ++++y+ +k W +F++an L++gD + F+l+++ + ++++v Lus10039303 197 FTVVMQQTHLIHGNRLNVPVDFWETNFVENRG--DIFLQLTNVGVWKGEYLVmdyGYTKRAYLEAKSWGSFARANYLRVGDKCAFELVEDgNAARFNV 292 5667778888889**********999655444..7999999999***999666745666669999***********************9999****** PP EEE-S CS B3 95 kvfrk 99 +fr+ Lus10039303 293 VIFRT 297 **997 PP | |||||||
3 | B3 | 45.5 | 1.4e-14 | 370 | 471 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 f ++ps+ + rl++p kf+e++ + ++ +++l+ g +W+vk+ + +++ +r ++ t+ W +F+++ gLk+gD++ F+l+ ++ +l+ Lus10039303 370 FMVNMKPSYIGPGTRLYVPAKFVETNFVN-QC-GDIVLQVpGVGGEWTVKYLVrgSGNLKRaVLQTESWTSFAEDTGLKVGDVCAFELVeFDTMPRLN 465 6677999*******************755.34.48999995678*******8855333344477779********************98444666788 PP EEEE-S CS B3 94 vkvfrk 99 v +fr+ Lus10039303 466 VVIFRA 471 988886 PP | |||||||
4 | B3 | 49.1 | 1e-15 | 536 | 625 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 fk+ ++ +l++gr ++p +f+ +++ ke+s++++l+ ++sWev+++ + ++r+++ +GW++F++ n+L +g ++vF+l++ +e Lus10039303 536 FKTVVTYPHLTRGRPYIPEEFL-KYM--KEGSRKMKLYV-ASKSWEVTICRykdkMRAKSRVFMNGGWRKFARGNKLVAGNVCVFELIEGeEED 625 688899999*************.776..44777888776.77*******6646554444559************************99653555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.55E-17 | 18 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.12E-11 | 22 | 115 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-18 | 22 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.957 | 23 | 117 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-10 | 25 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-12 | 31 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-17 | 190 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-17 | 190 | 300 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.10E-14 | 195 | 296 | No hit | No description |
PROSITE profile | PS50863 | 11.237 | 197 | 298 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-12 | 197 | 298 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-8 | 197 | 297 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-19 | 363 | 472 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-19 | 365 | 470 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.05E-19 | 368 | 470 | No hit | No description |
SMART | SM01019 | 4.8E-18 | 370 | 472 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-13 | 370 | 471 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.844 | 370 | 472 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-16 | 528 | 637 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-14 | 529 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.34E-14 | 534 | 624 | No hit | No description |
PROSITE profile | PS50863 | 11.871 | 535 | 640 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-13 | 536 | 635 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 536 | 628 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MAEQEEGEED GSELRYYKVT VPRFALILLL DPFRKGKLKL PEDFAEEHGS ELANEVLLNL 60 PNGAEWPVSV VKSGRKKIWF DNGWTKFAKF YSLEPTHFMV FQLADRSHFN VMIFDTSATE 120 INYSKKKCIA NVEPETNEAV ERHPPSSSKA QGTASGMKAD RNRSSNLRRP KPLTADKEAS 180 GILGKANAVF ESENPSFTVV MQQTHLIHGN RLNVPVDFWE TNFVENRGDI FLQLTNVGVW 240 KGEYLVMDYG YTKRAYLEAK SWGSFARANY LRVGDKCAFE LVEDGNAARF NVVIFRTSPC 300 RVGKEPTTVI PATESHLTSP RPIKLRRRIG VGRTARASKG QNQSSAPRRA KKAGFLARAK 360 AVFESDNRYF MVNMKPSYIG PGTRLYVPAK FVETNFVNQC GDIVLQVPGV GGEWTVKYLV 420 RGSGNLKRAV LQTESWTSFA EDTGLKVGDV CAFELVEFDT MPRLNVVIFR ASRDANRCHR 480 SGTGPTTKAT TSKKSGCTRK SERHEPSHGN TGKEREISSS AALEAANAFT SNEPSFKTVV 540 TYPHLTRGRP YIPEEFLKYM KEGSRKMKLY VASKSWEVTI CRYKDKMRAK SRVFMNGGWR 600 KFARGNKLVA GNVCVFELIE GEEEDDATVS AVVSVRIFRG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10039303 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10039303 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10039303 |