PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039303
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 641aa    MW: 71833.8 Da    PI: 9.9845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039303genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.8e-1531116999
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  d +++g l lp +faeehg++     ++ l+ ++g +W v + ++ +++++++ +GW +F+k   L+   f+vF+l +rs f  +v++f++
  Lus10039303  31 DPFRKGKLKLPEDFAEEHGSE--LANEVLLNLPNGAEWPVSV-VKSGRKKIWFDNGWTKFAKFYSLEPTHFMVFQLADRSHF--NVMIFDT 116
                  5578899***********966..6779***************.4555556**************************999999..9999987 PP

2B335.61.6e-11197297199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  f  v+ + +    +rl +p +f e++  ++++  ++ l+ ++  +W+ ++ +     ++++y+ +k W +F++an L++gD + F+l+++ + ++++v
  Lus10039303 197 FTVVMQQTHLIHGNRLNVPVDFWETNFVENRG--DIFLQLTNVGVWKGEYLVmdyGYTKRAYLEAKSWGSFARANYLRVGDKCAFELVEDgNAARFNV 292
                  5667778888889**********999655444..7999999999***999666745666669999***********************9999****** PP

                  EEE-S CS
           B3  95 kvfrk 99 
                   +fr+
  Lus10039303 293 VIFRT 297
                  **997 PP

3B345.51.4e-14370471199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 
                  f   ++ps+ +   rl++p kf+e++  + ++  +++l+    g +W+vk+ +  +++ +r ++ t+ W +F+++ gLk+gD++ F+l+  ++  +l+
  Lus10039303 370 FMVNMKPSYIGPGTRLYVPAKFVETNFVN-QC-GDIVLQVpGVGGEWTVKYLVrgSGNLKRaVLQTESWTSFAEDTGLKVGDVCAFELVeFDTMPRLN 465
                  6677999*******************755.34.48999995678*******8855333344477779********************98444666788 PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v +fr+
  Lus10039303 466 VVIFRA 471
                  988886 PP

4B349.11e-15536625290
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                  fk+ ++  +l++gr ++p +f+ +++  ke+s++++l+   ++sWev+++      + ++r+++ +GW++F++ n+L +g ++vF+l++  +e 
  Lus10039303 536 FKTVVTYPHLTRGRPYIPEEFL-KYM--KEGSRKMKLYV-ASKSWEVTICRykdkMRAKSRVFMNGGWRKFARGNKLVAGNVCVFELIEGeEED 625
                  688899999*************.776..44777888776.77*******6646554444559************************99653555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-1718117IPR015300DNA-binding pseudobarrel domain
CDDcd100178.12E-1122115No hitNo description
Gene3DG3DSA:2.40.330.104.0E-1822117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95723117IPR003340B3 DNA binding domain
SMARTSM010194.3E-1025117IPR003340B3 DNA binding domain
PfamPF023621.1E-1231116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-17190298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-17190300IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-14195296No hitNo description
PROSITE profilePS5086311.237197298IPR003340B3 DNA binding domain
SMARTSM010194.7E-12197298IPR003340B3 DNA binding domain
PfamPF023621.1E-8197297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19363472IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19365470IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-19368470No hitNo description
SMARTSM010194.8E-18370472IPR003340B3 DNA binding domain
PfamPF023624.5E-13370471IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844370472IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-16528637IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-14529621IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-14534624No hitNo description
PROSITE profilePS5086311.871535640IPR003340B3 DNA binding domain
SMARTSM010194.7E-13536635IPR003340B3 DNA binding domain
PfamPF023624.3E-13536628IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MAEQEEGEED GSELRYYKVT VPRFALILLL DPFRKGKLKL PEDFAEEHGS ELANEVLLNL  60
PNGAEWPVSV VKSGRKKIWF DNGWTKFAKF YSLEPTHFMV FQLADRSHFN VMIFDTSATE  120
INYSKKKCIA NVEPETNEAV ERHPPSSSKA QGTASGMKAD RNRSSNLRRP KPLTADKEAS  180
GILGKANAVF ESENPSFTVV MQQTHLIHGN RLNVPVDFWE TNFVENRGDI FLQLTNVGVW  240
KGEYLVMDYG YTKRAYLEAK SWGSFARANY LRVGDKCAFE LVEDGNAARF NVVIFRTSPC  300
RVGKEPTTVI PATESHLTSP RPIKLRRRIG VGRTARASKG QNQSSAPRRA KKAGFLARAK  360
AVFESDNRYF MVNMKPSYIG PGTRLYVPAK FVETNFVNQC GDIVLQVPGV GGEWTVKYLV  420
RGSGNLKRAV LQTESWTSFA EDTGLKVGDV CAFELVEFDT MPRLNVVIFR ASRDANRCHR  480
SGTGPTTKAT TSKKSGCTRK SERHEPSHGN TGKEREISSS AALEAANAFT SNEPSFKTVV  540
TYPHLTRGRP YIPEEFLKYM KEGSRKMKLY VASKSWEVTI CRYKDKMRAK SRVFMNGGWR  600
KFARGNKLVA GNVCVFELIE GEEEDDATVS AVVSVRIFRG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100393030.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-15B3 family protein