PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038929
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 272aa    MW: 30139.8 Da    PI: 7.2358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038929genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069205227123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k F +   L  H ++H
  Lus10038929 205 FKCSICDKEFESGQALGGHKKVH 227
                  89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-5434No hitNo description
SMARTSM003550.22729IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452734IPR007087Zinc finger, C2H2
PfamPF139121.7E-8931IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-8138162No hitNo description
PfamPF139121.9E-9140163IPR007087Zinc finger, C2H2
SMARTSM003550.085140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221140169IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-8200227No hitNo description
PfamPF139121.0E-10205227IPR007087Zinc finger, C2H2
SMARTSM003550.021205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNNNQPRSCK ICNRWFPTGK SMGGHMRSHL AKLPLPPKPY IPPPPPQQQQ PAGLLLTSSD  60
PPAPTPSYSP SSTLANSAED EDSSYPVMTQ TRSVRRKHTP PPPPPPPEQV TSSGEREAEV  120
AMCLLMMSFG RGGGGGGKLY RCEKCNRGFG SYQALGGHRA SHNKTGRQPV MMDYDDDGEE  180
EDDEDYHHII DDEASRIGSN SRRMFKCSIC DKEFESGQAL GGHKKVHFAE MNKMKKKPRL  240
ILSIDLNSPI PDQDDDDQQE VISRDAYRFS R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038929
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100389290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1538968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-16C2H2-like zinc finger protein