PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038273
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 318aa    MW: 35134.8 Da    PI: 6.5794
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038273genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.6e-18217251135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Lus10038273 217 CLHCGSDKTPQWRTGPMGPKTLCNACGVRYKSGRL 251
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-8216304IPR016679Transcription factor, GATA, plant
SMARTSM004012.4E-17211261IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714211247IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-14213273No hitNo description
Gene3DG3DSA:3.30.50.103.4E-14215249IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.17E-15216263No hitNo description
PfamPF003201.0E-15217251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESSDFFMAA YYNTSLHSTD FLPTETNPTA DHANFAVDDL LDFPTDDDAI MTDGFFDNLA  60
KNCDSPAFTP NDSSNSSSTT SAGYQSIADS HFSSELCVPY DDMAELEWLS NFVDDTSFST  120
DQTLQTNLHM LPGSKPEPMG RNATTSTNNN NSMFQADTPL PGKARSKRSR VAPGNWTTRL  180
LHLTPSIKGA SKKKQEGPNP NQNGPSSGSD SSAIRRCLHC GSDKTPQWRT GPMGPKTLCN  240
ACGVRYKSGR LVAEYRPAAS PTFVAAKHSN SHRKVLELRR QKEMHMVQQQ EQFLNQSSGM  300
FGDQYLINHQ HTRWPQF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069102.11e-117GATA transcription factor 12
SwissprotO826323e-68GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A067KXE61e-115A0A067KXE6_JATCU; GATA transcription factor
STRINGLus100382730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-63GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]